Paper
iPSC
Organoids

August 5, 2026

Generation of alveolar organoids from human induced pluripotent stem cells using ComfyCell 2L

Generation and characterization of iPSC-derived alveolar lung organoids using the BioThrust ComfyCell stirred-tank bioreactor.

Abstract

Introduction:

Organoids are increasingly establishing themselves as a valuable, patient-centered alternative to preclinical animal models as they are highly complex models for organ development studies and, in particular, robust disease models for mechanistic investigations and therapy response assessments.

Methods:

We previously established a very simple and practical protocol for producing induced pluripotent stem cell-derived lung organoids (iPSC-LuOrgs) from pre-differentiated embryoid bodies using a stirred bioreactor system. Here we adapted the protocol to investigate the generation of lung organoids directly from iPSCs in stirred suspension, and performed a comprehensive cellular and molecular characterization, including single-cell RNA sequencing, of the resulting LuOrgs.

Results:

Direct transfer of iPSCs as a single-cell suspension into the bioreactor and subsequent differentiation led to the formation of lung structures that appeared less differentiated and were predominantly alveolar in nature. Fibroblasts and bronchial epithelial cells were generated only to a limited extent.

Discussion:

Pre- differentiation of iPSCs, e.g., in embryoid bodies seems to be anecessary prerequisite for the efficient generation of iPSC-LuOrgs, which thenexhibit alveolar and bronchial cell types and structures supported bymesenchymal cells.

Key Takeaways

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Human iPSCs can be directly differentiated into lung organoids in a stirred-tank bioreactor.
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The resulting organoids showed predominantly alveolar characteristics.
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Bronchial epithelial cells and fibroblasts developed only to a limited extent.
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Pre-differentiation appears important for generating more complex lung organoid structures.
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Stirred-tank bioreactors provide a controlled platform for scalable 3D organoid culture.

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