Paper
HEK

July 27, 2026

High Cell Density Cultivation of HEK293 Cells Using a 2L Membrane‐Stirred Bioreactor

Bubble-free membrane stirring enables HEK293 perfusion culture at up to 93 million viable cells/mL. In a 2 L ComfyCell bioreactor coupled to ATF cell retention, HEK-LTV cultures achieved high-cell-density growth with 𝑘𝐿𝑎 values up to 29.5 h−1, controlled pH, and no observed foam formation.

Abstract

The use of perfusion systems for the continuous cultivation of animal cells at high cell density (HCD) for the production of recombinantproteins, viruses, and viral vectors has many advantages. Besides an enhancement of volumetric productivity and high cell viability, theproduct quality can be improved through a steady‐state environment. However, the establishment of such a process intensificationmethod using stirred tank bioreactors (STRs) for cultivations at very high cell concentrations (> 50 × 106 cells mL−1) can be challenging.In particular, limitations in the oxygen supply, CO2 stripping, high viscosity, and excessive foam formation can impede cell viability andproduct yields. In this study, we investigated a novel membrane‐stirrer (MemStir) based bioreactor that employs multiple hollow‐fibermembrane sheets arranged in a device that facilitates efficient gas transfer through bubble‐free diffusion for HCD cultivations. We foundthat the oxygen transfer rates at different tip speeds and gas flow rates resulted in volumetric mass transfer coefficient (kLa) values of10–30 h−1 enabling sufficient oxygen supply to support concentrations exceeding 50 × 106 cells mL−1. The functionality of themembrane‐stirrer was benchmarked in batch mode against shake flasks and a conventional STR equipped with a pitched‐bladeimpeller and an L‐drilled hole sparger. Suspension growth of a human embryonic kidney 293 LTV (HEK‐LTV) cell in the MemStirsystem was comparable to the cell growth in a STR. Using pure oxygen for aeration, a maximum viable cell concentration of 7.6 × 106cells mL−1 was achieved. As a starting point for further optimization, we investigated the impact of the MemStir system on viable cellconcentration, cell viability, dissolved oxygen partial pressure, pH control and foam formation in HCD cultivations in perfusion mode.Using the MemStir system equipped with an alternating tangential flow system, HEK‐LTV cells reached concentrations of up to92 × 106 cells mL−1 with a specific growth rate of 0.022 h−1 in perfusion mode. Moreover, controlling the pH in the range 7.0 to 7.3 waseasily achieved, and no foam formation was observed. Overall, these results suggest that the MemStir system is a viable option for HCDcultivation because it can overcome limitations of both aeration and foam formation.

Key Takeaways

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The membrane-stirred system delivered oxygen-transfer capacity suitable for high-density mammalian culture.
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Batch growth was comparable to conventional cultivation platforms, eaching final viable-cell concentrations of approximately 7.2 – 7.6 million cells/mL.
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Perfusion with ATF enabled very high HEK293 cell density, up to 93 million cells/mL at 2L working volume.
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No foam was observed during high-cell-density perfusion culture, and pH control between 7.0 and 7.3 was achieved without the CO2-stripping challenges and foaming.
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The authors identify media, perfusion, control strategy, and viscosity management as the principal next optimization targets.

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